GST GST payments
GST payment challan (PMT-06)
GST is paid by creating a challan in Form PMT-06 on gst.gov.in and paying it through an authorised bank. The money lands in your electronic cash ledger, and is used to settle liability only when you file the return.
- GST-registered businesses
- QRMP quarterly filers
- Accountants paying GST
- Businesses paying RCM tax
- Owners managing cash

On this page 12
Creating a challan, step by step
- Log in to gst.gov.in and go to Services, Payments, Create Challan.
- For GSTR-3B, you can let the portal auto-fill the cash needed from the saved return, or enter amounts yourself.
- Enter amounts under the right major head (IGST, CGST, SGST/UTGST, cess) and minor head (tax, interest, penalty, fee, others).
- Choose the payment mode and generate the challan. It gets a CPIN (common portal identification number), valid for a limited period (15 days at present).
- Pay. On success the bank returns a CIN (challan identification number) and your cash ledger is credited.
- Download the paid challan and keep it with the month's records.
Payment modes
| Mode | Notes |
|---|---|
| Net banking | Through authorised banks; credit is near-instant |
| UPI, credit or debit card | Available through the portal's payment gateways |
| NEFT/RTGS | Download the mandate form, pay from any bank; credit comes when the RBI confirms |
| Over the counter | Cash, cheque or DD at authorised bank branches, with a low per-challan limit for most taxpayers |
Modes and limits change; check the portal's payment page for the current list.
Getting the heads right
Most payment problems are wrong heads. An intra-state sale creates CGST and SGST liability; an inter-state sale creates IGST. Interest goes under the interest minor head, late fee under fee.
Example. GSTR-3B shows cash payable of IGST ₹8,000, CGST ₹12,500, SGST ₹12,500, plus late fee of ₹150 CGST and ₹150 SGST. One challan: IGST tax ₹8,000; CGST tax ₹12,500, fee ₹150; SGST tax ₹12,500, fee ₹150. Total ₹33,300.
If you pay ₹8,000 under CGST instead of IGST by mistake, the IGST stays unpaid. Move the amount with Form PMT-09 within the cash ledger before filing, rather than paying again. The ledger structure is explained in GST electronic ledgers.
Payment is not filing
A paid challan only fills your cash ledger. The liability is cleared when you file GSTR-3B and offset it. If you pay on the 19th but file on the 25th, interest can still apply for the days after the due date, because the tax counts as paid on offset through the return. Pay and file together.
QRMP taxpayers and other uses
Under the QRMP scheme you file GSTR-3B quarterly but pay tax monthly for the first two months of the quarter, by the 25th of the following month, using PMT-06. There are two methods:
- Fixed sum: a pre-filled amount based on your past returns.
- Self-assessment: work out the actual liability for the month, net of ITC, and pay that.
Details are in the QRMP scheme guide.
Challans are also needed for other payments that draw on the cash ledger:
- Voluntary payments in DRC-03 draw on the cash ledger, so deposit first.
- Interest on an earlier short payment.
- Tax under reverse charge, which must be paid in cash.
This is general information, not tax advice.
Booking the payment in your accounts
In the books, a GST payment is not an expense. When you deposit the challan, debit an 'Electronic Cash Ledger' (or GST deposit) account and credit the bank. When GSTR-3B is filed and offset, the output GST ledgers are debited against the input GST ledgers and the cash ledger account.
| Event | Debit | Credit |
|---|---|---|
| Challan paid ₹33,300 | Electronic cash ledger ₹33,300 | Bank ₹33,300 |
| Offset on filing | Output IGST, CGST, SGST; late fee ₹300 (expense) | Input GST ledgers; electronic cash ledger ₹33,300 |
Late fee and interest are expenses; the tax itself is not. Keeping the deposit as a separate account makes it easy to match your books with the portal's cash ledger.
Common mistakes
- Letting the CPIN expire and paying against it through NEFT, which delays the credit.
- Paying on the last day after bank cut-off times for NEFT/RTGS.
- Booking the challan in your books as an expense instead of against the GST payable ledgers.
Planning payments with Cashflow OS
Cashflow OS shows cash and bank balances and the cashflow forecast from your Tally data, so you can see a week ahead whether there will be enough to pay GST on the due date. The GSTR-3B view prepared from your Tally data gives the expected liability. The challan itself is created and paid on the GST portal.
Avoid these
Common mistakes
- MistakePaying the challan but filing GSTR-3B days laterDo this instead
Pay and file together; the tax counts as paid only on offset through the return, so interest can run in between.
- MistakeLetting the CPIN expire before payingDo this instead
Pay within the challan's validity, or create a fresh challan rather than paying an expired one.
- MistakePaying on the last day after NEFT/RTGS cut-offDo this instead
Pay a day or two early, or use net banking or UPI, so the cash ledger is credited before the due date.
- MistakeBooking the challan as an expenseDo this instead
Debit an electronic cash ledger or GST deposit account; only interest and late fee are expenses.
Keep handy
Checklist
GST payment challan (PMT-06) — 7 checks. Tick them as you go.
In Cashflow OS
How Cashflow OS helps
Cashflow OS puts your TallyPrime books on every phone in the team. Where it fits this topic:
Know a week ahead if cash will be short
Cashflow OS shows cash and bank balances and a cashflow forecast from your Tally data, so you can plan the GST payment before the due date.
See Financial reports from Tally
Expected liability from the GSTR-3B view
The GSTR-3B view prepared from your Tally data gives the expected liability before the challan is made. The challan is created and paid on the GST portal.
See GST reports from your Tally data
Questions people ask
What is the difference between CPIN and CIN?
Does paying a challan file my GSTR-3B?
I paid under the wrong head. Do I pay again?
Can I pay GST by UPI?
How long is a GST challan valid?
How do QRMP filers pay tax in the first two months?
Is late fee paid through the same challan?
Can tax under reverse charge be paid from ITC?
This page is general information for Indian businesses, not tax, legal or financial advice. Rules and rates change — check the official portals or your CA before acting.




